Interface | Description |
---|---|
RateMatrix |
abstract base class for all rate matrices
|
Class | Description |
---|---|
AbstractRateMatrix |
abstract base class for all rate matrices
|
AminoAcidModel |
base class of rate matrices for amino acids
|
MatrixExponential |
compute matrix exponential and, subsequently, transition probabilities
for a given rate matrix
|
WAG |
WAG model of amino acid evolution (S.
|
http://code.google.com/p/jebl2/