java.io.Serializable
, java.lang.Cloneable
, RateMatrix
public class WAG extends AminoAcidModel
Constructor | Description |
---|---|
WAG(double[] f) |
constructor
|
Modifier and Type | Method | Description |
---|---|---|
static double[] |
getOriginalFrequencies() |
|
static void |
getOriginalFrequencies(double[] f) |
get the frequencies of the original data set that
formed the basis for the estimation of the rate matrix
|
java.lang.String |
getUniqueName() |
getDimension, getEquilibriumFrequencies, getEquilibriumFrequency, getRelativeRates, getSequenceType, getTransitionProbabilities, getTransitionProbability, rebuild, scale, setDistance, setDistanceTranspose, setParametersNoScale
public static void getOriginalFrequencies(double[] f)
f
- array where amino acid frequencies will be storedpublic static double[] getOriginalFrequencies()
public java.lang.String getUniqueName()
http://code.google.com/p/jebl2/