Package | Description |
---|---|
jebl.evolution.align.scores | |
jebl.evolution.substmodel |
Constructor | Description |
---|---|
SubstScoreMatrix(RateMatrix rateMatrix) |
Modifier and Type | Class | Description |
---|---|---|
class |
AbstractRateMatrix |
abstract base class for all rate matrices
|
class |
AminoAcidModel |
base class of rate matrices for amino acids
|
class |
WAG |
WAG model of amino acid evolution (S.
|
Modifier and Type | Method | Description |
---|---|---|
void |
MatrixExponential.setMatrix(RateMatrix r) |
update rate matrix used in present module
|
Constructor | Description |
---|---|
MatrixExponential(RateMatrix r) |
create module
|
http://code.google.com/p/jebl2/