Package | Description |
---|---|
jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
jebl.evolution.aligners | |
jebl.evolution.alignments | |
jebl.evolution.io | |
jebl.evolution.parsimony | |
jebl.evolution.sequences | |
jebl.evolution.substmodel |
Class | Description |
---|---|
Sequence |
A biomolecular sequence.
|
Class | Description |
---|---|
Sequence |
A biomolecular sequence.
|
Class | Description |
---|---|
Sequence |
A biomolecular sequence.
|
Sequences |
A set of sequence objects.
|
SequenceType |
Interface for sequences data types.
|
State |
Class | Description |
---|---|
Sequence |
A biomolecular sequence.
|
SequenceType |
Interface for sequences data types.
|
Class | Description |
---|---|
State |
Class | Description |
---|---|
AminoAcidState | |
CodonState |
As of 2007-07-30, instances of this class are only constructed for non-ambigous
nucleotide triplets - see
Codons . |
FilteredSequence | |
GeneticCode |
A set of standard genetic codes.
|
NucleotideState | |
Sequence |
A biomolecular sequence.
|
SequenceType |
Interface for sequences data types.
|
State | |
StateClassification |
Class | Description |
---|---|
SequenceType |
Interface for sequences data types.
|
http://code.google.com/p/jebl2/